Welcome to PyFRAP’s API!¶
PyFRAP is a extensive Python based FRAP (Fluorescence Recovery After Photobleaching) analysis software, featuring various tools that help analyzing FRAP datasets, such as
- Import FRAP datasets from timelapse experiments and analyze image data with various options such as
- various filters
- background substraction
- illumination correction
- Simulate the FRAP experiment with exact interpolated initial conditions
- Fit simulated experiment to analyzed data and extract diffusion coefficient
- Statistical analysis of fitting results
- Hierarchical data structure making data exchange/sharing easy
- Comprehensive GUI, making almost all PyFRAP tools available
I have tried to keep the API short but clear. If it is unclear, don’t hesitate to mail.
Installation (setup.py)¶
The modules package¶
- pyfrp.modules package
- Submodules
- pyfrp.modules.pyfrp_IO_module module
- pyfrp.modules.pyfrp_fit_module module
- pyfrp.modules.pyfrp_geometry_module module
- pyfrp.modules.pyfrp_gmsh_IO_module module
- pyfrp.modules.pyfrp_gmsh_geometry module
- pyfrp.modules.pyfrp_gmsh_module module
- pyfrp.modules.pyfrp_idx_module module
- pyfrp.modules.pyfrp_img_module module
- pyfrp.modules.pyfrp_integration_module module
- pyfrp.modules.pyfrp_misc_module module
- pyfrp.modules.pyfrp_openscad_module module
- pyfrp.modules.pyfrp_optimization_module module
- pyfrp.modules.pyfrp_plot_module module
- pyfrp.modules.pyfrp_sim_module module
- pyfrp.modules.pyfrp_stats_module module
- pyfrp.modules.pyfrp_term_module module
- pyfrp.modules.pyfrp_vtk_module module
- pyfrp.modules.pyfrp_zstack_module module
- Module contents
The subclasses package¶
- pyfrp.subclasses package
- Submodules
- pyfrp.subclasses.pyfrp_ROI module
- pyfrp.subclasses.pyfrp_analysis module
- pyfrp.subclasses.pyfrp_conf module
- pyfrp.subclasses.pyfrp_embryo module
- pyfrp.subclasses.pyfrp_fit module
- pyfrp.subclasses.pyfrp_geometry module
- pyfrp.subclasses.pyfrp_mesh module
- pyfrp.subclasses.pyfrp_molecule module
- pyfrp.subclasses.pyfrp_simulation module
- Module contents